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Imaging technologies for plant high-throughput phenotyping: a review

Yong ZHANG, Naiqian ZHANG

Frontiers of Agricultural Science and Engineering 2018, Volume 5, Issue 4,   Pages 406-419 doi: 10.15302/J-FASE-2018242

Abstract:

Phenomics studies a variety of phenotypic plant traits and is the key to understanding genetic functionsrapid development of genomics, many plant phenotyping platforms have been developed to study complex traitsapplications of these technologies in detecting and measuring plant morphological, physiological, and pathologicaltraits, and compares their advantages and limitations.

Keywords： high-throughput phenotyping     imaging technology     morphological traits     pathological traits     physiologicaltraits    

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Genomic regions under selection for important traits in domestic horse breeds

Xuexue LIU, Yuehui MA, Lin JIANG

Frontiers of Agricultural Science and Engineering 2017, Volume 4, Issue 3,   Pages 289-294 doi: 10.15302/J-FASE-2017155

Abstract: Therefore, identification of genetic markers underlying the traits of interest in domestic horses is

Keywords： horse     coat color     racing performance     gait     height    

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Observations on pathological and histochemical changes in piglet livers infected with Taenia saginata

LINGHU Yan, ZHU Wujun, BAO Huai′en, CHEN Yan

Frontiers of Medicine 2007, Volume 1, Issue 3,   Pages 258-263 doi: 10.1007/s11684-007-0049-8

Abstract: To study the pathological and histochemical characteristics of lesions in piglet livers infected withThe pathological changes in the piglet livers were observed after the infection using liver sectionsconcluded that pigs are the favorable intermediate host of and its infection can result in serious pathological

Keywords： hydropic degeneration     significant difference     -exposed     favorable intermediate     different    

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Recent advances in understanding genetic variants associated with economically important traits in sheep

Song-Song XU, Meng-Hua LI

Frontiers of Agricultural Science and Engineering 2017, Volume 4, Issue 3,   Pages 279-288 doi: 10.15302/J-FASE-2017151

Abstract: However, genetic improvements for the key traits associated with meat, growth, milk, wool, reproductiontechnologies over the last decade, a list of functional genes and genetic variants associated with these traitsThis review covers recent genome-wide studies on sheep productive traits using high-throughput screeningcomprehensive information on functional genes and genetic variants associated with economically important traits

Keywords： sheep     high-throughput screening     productive traits     genome-wide studies    

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Effects of previous drying of sediment on root functional traits and rhizoperformance of emerged macrophytes

Frontiers of Environmental Science & Engineering 2021, Volume 15, Issue 6, doi: 10.1007/s11783-021-1427-1

Abstract:

• Sediment desiccation alters morphological characteristics of aquatic sediment.

Keywords： Fibrous-root macrophytes     Thick-root macrophytes     Nutrients removal     Wet sediment     Dried-rewetted sediment    

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A genome-wide association study of five meat quality traits in Yorkshire pigs

Qian DONG,Huiying LIU,Xinyun LI,Wei WEI,Shuhong ZHAO,Jianhua CAO

Frontiers of Agricultural Science and Engineering 2014, Volume 1, Issue 2,   Pages 137-143 doi: 10.15302/J-FASE-2014014

Abstract: To identify genomic regions and haplotype blocks responsible for meat quality traits in pigs, a genome-wideassociation study was conducted for five traits including intramuscular fat content, pH at 45 min andtotal of 344 single nucleotide polymorphisms (SNP) were significantly associated with five meat quality traitsaddition, 25 haplotype blocks based on 116 SNPs were revealed with SNP combination patterns for five traitsOur study added new SNP information for identification of meat quality traits in pigs and will help elucidate

Keywords： Pig     GWAS     meat quality trait     SNP    

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BULKED SEGREGANT RNA SEQUENCING (BSR-SEQ) IDENTIFIES A NOVEL ALLELE ASSOCIATED WITH WEEPING TRAITS IN

Frontiers of Agricultural Science and Engineering 2021, Volume 8, Issue 2,

Abstract: However, exploration of casual genes controlling weeping traits is rather limited.variation in the Pm024074 gene, providing precise marker-assisted breeding for weeping traits

Keywords： BSR-seq / PmUGT72B3 / Prunus mume / UDP-glycosyltransferase / weeping shoots / WGCNA    

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Human microbiome and prostate cancer development: current insights into the prevention and treatment

Solmaz Ohadian Moghadam, Seyed Ali Momeni

Frontiers of Medicine 2021, Volume 15, Issue 1,   Pages 11-32 doi: 10.1007/s11684-019-0731-7

Abstract: The huge communities of microorganisms that symbiotically colonize humans are recognized as significant players in health and disease. The human microbiome may influence prostate cancer development. To date, several studies have focused on the effect of prostate infections as well as the composition of the human microbiome in relation to prostate cancer risk. Current studies suggest that the microbiota of men with prostate cancer significantly differs from that of healthy men, demonstrating that certain bacteria could be associated with cancer development as well as altered responses to treatment. In healthy individuals, the microbiome plays a crucial role in the maintenance of homeostasis of body metabolism. Dysbiosis may contribute to the emergence of health problems, including malignancy through affecting systemic immune responses and creating systemic inflammation, and changing serum hormone levels. In this review, we discuss recent data about how the microbes colonizing different parts of the human body including urinary tract, gastrointestinal tract, oral cavity, and skin might affect the risk of developing prostate cancer. Furthermore, we discuss strategies to target the microbiome for risk assessment, prevention, and treatment of prostate cancer.

Keywords： microbiome     prostate cancer     prevention     treatment     molecular pathological epidemiology (MPE)     biomarker    

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Explanation of Pathological Changes of Five Zang Organs in Wuxingshengke

吉良展,陈光曼

Strategic Study of CAE 2006, Volume 8, Issue 4,   Pages 94-94

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BULKED SEGREGANT RNA SEQUENCING (BSR-SEQ) IDENTIFIES A NOVEL ALLELE ASSOCIATED WITH WEEPING TRAITS IN

Xiaokang ZHUO, Tangchun ZHENG, Zhiyong ZHANG, Suzhen LI, Yichi ZHANG, Lidan SUN, Weiru YANG, Jia WANG, Tangren CHENG, Qixiang ZHANG

Frontiers of Agricultural Science and Engineering   Pages 196-214 doi: 10.15302/J-FASE-2020379

Abstract: However, exploration of casual genes controlling weeping traits is rather limited.developed based on the variation in the gene, providing precise marker-assisted breeding for weeping traits

Keywords： BSR-seq     PmUGT72B3     Prunus mume     UDP-glycosyltransferase     weeping shoots     WGCNA    

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Pathological study of 130 cases of nonalcoholic fatty liver disease based on NASH-CRN system

ZHOU Guangde, ZHAO Jingmin, DING Xiaohui, PAN Deng, SUN Yanling, YANG Jianfa, ZHAO Yulai

Frontiers of Medicine 2007, Volume 1, Issue 4,   Pages 413-417 doi: 10.1007/s11684-007-0081-8

Abstract: To summarize the pathological features of nonalcoholic liver disease (NAFLD) in China based on a histological
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Plant Traits for Phytoremediation in the Tropics Article

Xiangting Cleo Chen, Liling Huang, Tze Hsien Agnes Chang, Bee Lian Ong, Say Leong Ong, Jiangyong Hu

Engineering 2019, Volume 5, Issue 5,   Pages 841-848 doi: 10.1016/j.eng.2019.07.019

Abstract: This paper discusses plant traits that can enhance the phytoremediation of nutrient pollutants in stormwater

Keywords： Nitrogen     Phosphorus     Plant traits     Bioretention system     Stormwater     Tropical plant     Nutrient pollutant    

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Bidirectional Causality Between Immunoglobulin G N-Glycosylation and Metabolic Traits: A Mendelian Randomization Article

Xiaoni Meng, Weijie Cao, Di Liu, Isinta Maranga Elijah, Weijia Xing, Haifeng Hou, Xizhu Xu, Manshu Song, Youxin Wang

Engineering 2023, Volume 26, Issue 7,   Pages 74-88 doi: 10.1016/j.eng.2022.11.004

Abstract: Bidirectional causalityAlthough the association between immunoglobulin G (IgG) N-glycosylation and metabolic traitsdata in order to investigate the bidirectional causal association of IgG Nglycosylation with metabolic traits)) genetically determined IgG N-glycans were identified as being associated with metabolic traitsstudies, respectively, by integrating IgG N-glycan-QTL variants with GWAS results for metabolic traitsMR analysis of the integrated metabolic-QTL variants with the GWAS results for IgG N-glycosylation traits

Keywords： Mendelian randomization study     Immunoglobulin G     N-glycosylation     Metabolic traits     Quantitative trait    

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impacts on sludge fermentation: Focusing on the particular metabolic processes and microbial genetic traits

Frontiers of Environmental Science & Engineering 2022, Volume 16, Issue 8, doi: 10.1007/s11783-022-1527-6

Abstract:

• The promoting effects for VFA generation follow the order of APG>SDBS>HTAB.

Keywords： Waste activated sludge (WAS)     Volatile fatty acids (VFA)     Surfactant types     Functional microorganisms     Metabolic activity upregulation    

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Modulation of Gut Microbiota in Pathological States

Yulan Wang, Baohong Wang, Junfang Wu, Xiangyang Jiang, Huiru Tang, Ole H. Nielsen

Engineering 2017, Volume 3, Issue 1,   Pages 83-89 doi: 10.1016/J.ENG.2017.01.013

Abstract:

The human microbiota is an aggregate of microorganisms residing in the human body, mostly in the gastrointestinal tract (GIT). Our gut microbiota evolves with us and plays a pivotal role in human health and disease. In recent years, the microbiota has gained increasing attention due to its impact on host metabolism, physiology, and immune system development, but also because the perturbation of the microbiota may result in a number of diseases. The gut microbiota may be linked to malignancies such as gastric cancer and colorectal cancer. It may also be linked to disorders such as nonalcoholic fatty liver disease (NAFLD); obesity and diabetes, which are characterized as “lifestyle diseases” of the industrialized world; coronary heart disease; and neurological disorders. Although the revolution in molecular technologies has provided us with the necessary tools to study the gut microbiota more accurately, we need to elucidate the relationships between the gut microbiota and several human pathologies more precisely, as understanding the impact that the microbiota plays in various diseases is fundamental for the development of novel therapeutic strategies. Therefore, the aim of this review is to provide the reader with an updated overview of the importance of the gut microbiota for human health and the potential to manipulate gut microbial composition for purposes such as the treatment of antibiotic-resistant Clostridium difficile (C. difficile) infections. The concept of altering the gut community by microbial intervention in an effort to improve health is currently in its infancy. However, the therapeutic implications appear to be very great. Thus, the removal of harmful organisms and the enrichment of beneficial microbes may protect our health, and such efforts will pave the way for the development of more rational treatment options in the future.

Keywords： Gut microbes     Diseases     Microbial modulation    

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Title Author Date Type Operation

Imaging technologies for plant high-throughput phenotyping: a review

Yong ZHANG, Naiqian ZHANG

Journal Article

Genomic regions under selection for important traits in domestic horse breeds

Xuexue LIU, Yuehui MA, Lin JIANG

Journal Article

Observations on pathological and histochemical changes in piglet livers infected with Taenia saginata

LINGHU Yan, ZHU Wujun, BAO Huai′en, CHEN Yan

Journal Article

Recent advances in understanding genetic variants associated with economically important traits in sheep

Song-Song XU, Meng-Hua LI

Journal Article

Effects of previous drying of sediment on root functional traits and rhizoperformance of emerged macrophytes

Journal Article

A genome-wide association study of five meat quality traits in Yorkshire pigs

Qian DONG,Huiying LIU,Xinyun LI,Wei WEI,Shuhong ZHAO,Jianhua CAO

Journal Article

BULKED SEGREGANT RNA SEQUENCING (BSR-SEQ) IDENTIFIES A NOVEL ALLELE ASSOCIATED WITH WEEPING TRAITS IN

Journal Article

Human microbiome and prostate cancer development: current insights into the prevention and treatment

Solmaz Ohadian Moghadam, Seyed Ali Momeni

Journal Article

Explanation of Pathological Changes of Five Zang Organs in Wuxingshengke

吉良展,陈光曼

Journal Article

BULKED SEGREGANT RNA SEQUENCING (BSR-SEQ) IDENTIFIES A NOVEL ALLELE ASSOCIATED WITH WEEPING TRAITS IN

Xiaokang ZHUO, Tangchun ZHENG, Zhiyong ZHANG, Suzhen LI, Yichi ZHANG, Lidan SUN, Weiru YANG, Jia WANG, Tangren CHENG, Qixiang ZHANG

Journal Article

Pathological study of 130 cases of nonalcoholic fatty liver disease based on NASH-CRN system

ZHOU Guangde, ZHAO Jingmin, DING Xiaohui, PAN Deng, SUN Yanling, YANG Jianfa, ZHAO Yulai

Journal Article

Plant Traits for Phytoremediation in the Tropics

Xiangting Cleo Chen, Liling Huang, Tze Hsien Agnes Chang, Bee Lian Ong, Say Leong Ong, Jiangyong Hu

Journal Article

Bidirectional Causality Between Immunoglobulin G N-Glycosylation and Metabolic Traits: A Mendelian Randomization

Xiaoni Meng, Weijie Cao, Di Liu, Isinta Maranga Elijah, Weijia Xing, Haifeng Hou, Xizhu Xu, Manshu Song, Youxin Wang

Journal Article

impacts on sludge fermentation: Focusing on the particular metabolic processes and microbial genetic traits

Journal Article

Modulation of Gut Microbiota in Pathological States

Yulan Wang, Baohong Wang, Junfang Wu, Xiangyang Jiang, Huiru Tang, Ole H. Nielsen

Journal Article